Functional Genomics

Cell Maps for AI (CM4AI) Grand Challenge

Illustration for Cell Maps For AI DGP

The Functional Genomics Grand Challenge seeks to map the spatiotemporal architecture of human cells and use these maps toward the grand challenge of interpretable genotype-phenotype learning. In genomics and precision medicine, machine learning models are often “black boxes,” predicting phenotypes from genotypes without understanding the mechanisms by which such translation occurs. To address this deficiency, this project will launch a coordinated effort involving three complementary mapping approaches – proteomic mass spectrometry, cellular imaging, and genetic perturbation via CRISPR/Cas9 – creating a library of large-scale maps of cellular structure/function across demographic and disease contexts.

cm4ai.org

Who We Are

Headshot for Trey Ideker.
Trey Ideker
Contact Principal Investigator
University of California San Diego
Headshot for J-C Bélisle-Pipon.
J-C Bélisle-Pipon
Principal Investigator
Simon Fraser University
Headshot for Jake Chen.
Jake Chen
Principal Investigator
University of Alabama at Birmingham
Headshot for Timothy Clark.
Timothy Clark
Principal Investigator
University of Virginia
Headshot for Nevan Krogan.
Nevan Krogan
Principal Investigator
University of California San Francisco
Headshot for Emma Lundberg.
Emma Lundberg
Principal Investigator
Stanford University
Headshot for Prashant Mali.
Prashant Mali
Principal Investigator
University of California San Diego
Headshot for Vardit Ravitsky.
Vardit Ravitsky
Principal Investigator
University of Montreal
Headshot for Wade Shulz.
Wade Shulz
Principal Investigator
Yale University
Headshot for Cynthia Brandt.
Cynthia Brandt
Co-PI
Yale University
Headshot for Ying DIng.
Ying Ding
Co-PI
University of Texas at Austin
Headshot for Sarah Ratcliffe.
Sarah Ratcliffe
Co-PI
University of Virginia
Headshot for Andrej Sali.
Andrej Sali
Co-PI
University of California San Francisco